PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_32662_iso_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 245aa    MW: 27072.9 Da    PI: 9.2116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_32662_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18555155
                                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                                         ++++GVr++  +g+Wv+eIr+p        kr++lg+f tae Aa+a+++a+  ++g
  cra_locus_32662_iso_3_len_998_ver_3  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEAAARAYDEAAILMNG 55
                                         59*****999.**********8.....335**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.55E-20565No hitNo description
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
SMARTSM003809.0E-40669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32664IPR001471AP2/ERF domain
PfamPF008473.5E-11655IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-20664IPR016177DNA-binding domain
PRINTSPR003673.3E-10718IPR001471AP2/ERF domain
PRINTSPR003673.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVYSKKFRGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE AAARAYDEAA ILMNGQNAKT  60
NFPVVNKENN NNINNGDHCG ITKLPMTTTT TTTHESSSSS SSSSTASLSE ILSAKLRKCC  120
KDPAPSLTCL RLDNSQIGIW QKRTGRNSGS SWVMKLELGN NNKKNNNTIK DDLDHHHHHH  180
HQNSSSSSSI LSSTTSSSSS GSSSSSRGAN NGSREYDTGM EEENKVAIQM VEELLNWSTY  240
DPTLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-17564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459181.14e-73PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ9XI336e-66WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A068UZ346e-79A0A068UZ34_COFCA; Uncharacterized protein
STRINGGSMUA_Achr7P10160_0014e-69(Musa acuminata)